testing Pelegant on elegantExamples

Moderators: cyao, michael_borland

marlibgin
Posts: 54
Joined: 15 Mar 2011, 12:43

testing Pelegant on elegantExamples

Post by marlibgin » 15 Jul 2013, 11:22

I am testing Pelegant

[This is elegant 25.0.3, Mar 2 2012, by M. Borland, W. Guo, V. Sajaev, Y. Wang, Y. Wu, and A. Xiao.
Parallelized by Y. Wang, H. Shang, and M. Borland.]

on our local cluster. I have started with some examples taken from elegantExamples/parallel/DA,FMA,LMA. All worked fine. I then (maybe naively) tried to run another, randomly chosen case with Pelegant. I have picked up elegantExamples/acceptance/energyscan1 and submitted a job with Pelegant.

qsub -V -q ap-high.q -pe openmpi 4 /dls_sw/apps/openmpi/1.6.5/64/bin/mpirun Pelegant run.ele

The job crashed leaving a log file with this message:
Fatal error in PMPI_Bcast: Invalid root, error stack:
PMPI_Bcast(1478): MPI_Bcast(buf=0x993788, count=1, MPI_LONG, root=1, MPI_COMM_WORLD) failed
PMPI_Bcast(1440): Invalid root (value given was 1)
--------------------------------------------------------------------------
orterun noticed that the job aborted, but has no info as to the process
that caused that situation.
--------------------------------------------------------------------------

My question is. Can any of the elegantExamples be run with Pelegant, or are there some limitations on its use?
Concerning the error above, is there any advice/clue about it?

Thanks very much for the kind attention , Marco

michael_borland
Posts: 1772
Joined: 19 May 2008, 09:33
Location: Argonne National Laboratory
Contact:

Re: testing Pelegant on elegantExamples

Post by michael_borland » 16 Sep 2013, 08:04

Marco,

In general, all of the examples should work with Pelegant. I tried the one that gave you a problem and it ran fine. Did you have trouble with other examples?

--Michael

tiansk
Posts: 39
Joined: 16 Mar 2012, 22:01

Re: testing Pelegant on elegantExamples

Post by tiansk » 14 Oct 2015, 01:07

I meet the same error

Fatal error in PMPI_Bcast: Invalid root, error stack:
PMPI_Bcast(1606): MPI_Bcast(buf=0x9050e8, count=1, MPI_LONG, root=1, MPI_COMM_WORLD) failed
PMPI_Bcast(1568): Invalid root (value given was 1)
--------------------------------------------------------------------------
mpiexec noticed that the job aborted, but has no info as to the process
that caused that situation.
--------------------------------------------------------------------------


How to solve this problem?

soliday
Posts: 366
Joined: 28 May 2008, 09:15

Re: testing Pelegant on elegantExamples

Post by soliday » 14 Oct 2015, 09:50

I googled this message and it seems to be coming from using a different MPI implementation than the one it was compiled on. If you are using the openmpi then you need the elegant.openmpi RPM file. If you are using mpich then you need the elegant.mpich RPM file. These were built using the standard system libraries. If you are using a newer release of openmpi or mpich than the standard system libraries, it may or may not work. If it doesn't, you will need to use the Build_AOP_RPMs script and supply it with the path to mpicc for the version you are using.

tiansk
Posts: 39
Joined: 16 Mar 2012, 22:01

Re: testing Pelegant on elegantExamples

Post by tiansk » 14 Oct 2015, 21:25

On my computer,there are two mpiexec commands
/usr/bin
/home/tiansk/elegant/mpich2-1.1/bin/

the second one is in my account,that is the mpiexec command I wanted so

I changed the ~/.bashrc file and change the PATH.

The problem is resolved.

Thanks

tiansk
Posts: 39
Joined: 16 Mar 2012, 22:01

Re: testing Pelegant on elegantExamples

Post by tiansk » 15 Oct 2015, 20:47

I meet an other problem.
I test the Pelegant with the example
/home/tiansk/elegantExamples/acceptance/energyScan1

as follow,tThere is no error in the process of simulation






mpiexec -np 2 Pelegant run.ele


Running elegant at Fri Oct 16 09:27:24 2015

This is elegant 28.1.0, Jul 24 2015, by M. Borland, M. Carla', N. Carmignani, M. Ehrlichman, L. Emery, W. Guo, V. Sajaev, R. Soliday, C.-X. Wang, Y. Wang, Y. Wu, and A. Xiao.
Parallelized by Y. Wang, H. Shang, and M. Borland.
Link date: Jul 24 2015 11:14:16
statistics: ET: 00:00:00 CP: 0.00 BIO:0 DIO:0 PF:0 MEM:20048
&run_setup
lattice = lattice.lte,
use_beamline = bl,
rootname = {NULL},
output = {NULL},
centroid = %s.cen,
sigma = %s.sig,
final = %s.fin,
acceptance = %s.acc,
losses = %s.los,
magnets = {NULL},
semaphore_file = {NULL},
parameters = {NULL},
combine_bunch_statistics = 0,
wrap_around = 1,
final_pass = 0,
default_order = 2,
concat_order = 0,
print_statistics = 0,
show_element_timing = 0,
monitor_memory_usage = 0,
random_number_seed = 987654321,
correction_iterations = 1,
echo_lattice = 0,
p_central = 0.000000000000000e+00,
p_central_mev = 1.000000000000000e+03,
always_change_p0 = 0,
load_balancing_on = 0,
random_sequence_No = 1,
expand_for = {NULL},
tracking_updates = 1,
search_path = {NULL},
element_divisions = 0,
&end
Seeding random number generators (mode=3)
length of beamline BL per pass: 5.109999999999996e+01 m
statistics: ET: 00:00:00 CP: 0.00 BIO:0 DIO:0 PF:0 MEM:20155
&run_control
n_steps = 1,
bunch_frequency = 0.000000000000000e+00,
n_indices = 1,
n_passes = 1,
reset_rf_for_each_step = 1,
first_is_fiducial = 0,
restrict_fiducialization = 0,
reset_scattering_seed = 0,
&end
statistics: ET: 00:00:00 CP: 0.00 BIO:0 DIO:0 PF:0 MEM:20155
&vary_element
index_number = 0,
index_limit = 21,
name = MALIN,
item = DP,
initial = -5.000000000000000e-01,
final = 5.000000000000000e-01,
differential = 0,
geometric = 0,
multiplicative = 0,
enumeration_file = {NULL},
enumeration_column = {NULL},
&end
statistics: ET: 00:00:00 CP: 0.00 BIO:0 DIO:0 PF:0 MEM:20155
&bunched_beam
bunch = %s.bun,
n_particles_per_bunch = 1000,
time_start = 0.000000000000000e+00,
matched_to_cell = {NULL},
emit_x = 1.000000000000000e-06,
emit_nx = 0.000000000000000e+00,
beta_x = 1.000000000000000e+02,
alpha_x = 0.000000000000000e+00,
eta_x = 0.000000000000000e+00,
etap_x = 0.000000000000000e+00,
emit_y = 1.000000000000000e-06,
emit_ny = 0.000000000000000e+00,
beta_y = 1.000000000000000e+02,
alpha_y = 0.000000000000000e+00,
eta_y = 0.000000000000000e+00,
etap_y = 0.000000000000000e+00,
use_twiss_command_values = 0,
Po = 1.956950762296902e+03,
sigma_dp = 0.000000000000000e+00,
sigma_s = 0.000000000000000e+00,
dp_s_coupling = 0.000000000000000e+00,
emit_z = 0.000000000000000e+00,
beta_z = 0.000000000000000e+00,
alpha_z = 0.000000000000000e+00,
momentum_chirp = 0.000000000000000e+00,
one_random_bunch = 1,
save_initial_coordinates = 1,
limit_invariants = 0,
symmetrize = 0,
halton_sequence[0] = 0, 0, 0,
halton_radix[0] = 0, 0, 0, 0, 0, 0,
optimized_halton = 0,
randomize_order[0] = 0, 0, 0,
limit_in_4d = 0,
enforce_rms_values[0] = 0, 0, 0,
distribution_cutoff[0] = 1.000000000000000e+00, 1.000000000000000e+00, 2.000000000000000e+00,
distribution_type[0] = uniform-ellipse, uniform-ellipse, gaussian,
centroid[0] = 0.000000000000000e+00, 0.000000000000000e+00, 0.000000000000000e+00, 0.000000000000000e+00,
0.000000000000000e+00, 0.000000000000000e+00,
first_is_fiducial = 0,
&end
statistics: ET: 00:00:00 CP: 0.00 BIO:0 DIO:0 PF:0 MEM:20158
&track
center_on_orbit = 0,
center_momentum_also = 1,
offset_by_orbit = 0,
offset_momentum_also = 1,
soft_failure = 1,
use_linear_chromatic_matrix = 0,
longitudinal_ring_only = 0,
ibs_only = 0,
stop_tracking_particle_limit = -1,
&end
vary counter reset
121 matrices (re)computed
tracking step 1.1
generating bunch 1.1
dumping bunch
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:24: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:24: Rf phases/references reset.
188 particles transmitted, total effort of 188 particle-turns
125440 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 188, n_total = 1000, n_lost = 812
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:00 CP: 0.07 BIO:0 DIO:0 PF:0 MEM:22770


counter advanced: 1
values advanced: -4.500000e-01
1 matrices (re)computed
tracking step 2.2
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:24: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:24: Rf phases/references reset.
206 particles transmitted, total effort of 206 particle-turns
257808 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 206, n_total = 1000, n_lost = 794
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:00 CP: 0.12 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 2
values advanced: -4.000000e-01
1 matrices (re)computed
tracking step 3.3
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:24: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:24: Rf phases/references reset.
227 particles transmitted, total effort of 227 particle-turns
398168 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 227, n_total = 1000, n_lost = 773
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:00 CP: 0.17 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 3
values advanced: -3.500000e-01
1 matrices (re)computed
tracking step 4.4
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:24: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:24: Rf phases/references reset.
241 particles transmitted, total effort of 241 particle-turns
545536 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 241, n_total = 1000, n_lost = 759
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:00 CP: 0.22 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 4
values advanced: -3.000000e-01
1 matrices (re)computed
tracking step 5.5
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:24: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:24: Rf phases/references reset.
246 particles transmitted, total effort of 246 particle-turns
698176 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 246, n_total = 1000, n_lost = 754
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:01 CP: 0.27 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 5
values advanced: -2.500000e-01
1 matrices (re)computed
tracking step 6.6
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:25: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:25: Rf phases/references reset.
257 particles transmitted, total effort of 257 particle-turns
855784 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 257, n_total = 1000, n_lost = 743
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:01 CP: 0.34 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 6
values advanced: -2.000000e-01
1 matrices (re)computed
tracking step 7.7
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:25: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:25: Rf phases/references reset.
265 particles transmitted, total effort of 265 particle-turns
1018212 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 265, n_total = 1000, n_lost = 735
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:01 CP: 0.39 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 7
values advanced: -1.500000e-01
1 matrices (re)computed
tracking step 8.8
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:25: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:25: Rf phases/references reset.
264 particles transmitted, total effort of 264 particle-turns
1182532 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 264, n_total = 1000, n_lost = 736
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:01 CP: 0.45 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 8
values advanced: -1.000000e-01
1 matrices (re)computed
tracking step 9.9
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:25: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:25: Rf phases/references reset.
264 particles transmitted, total effort of 264 particle-turns
1348228 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 264, n_total = 1000, n_lost = 736
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:01 CP: 0.51 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 9
values advanced: -5.000000e-02
1 matrices (re)computed
tracking step 10.10
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:25: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:25: Rf phases/references reset.
267 particles transmitted, total effort of 267 particle-turns
1517400 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 267, n_total = 1000, n_lost = 733
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:01 CP: 0.56 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 10
values advanced: 0.000000e+00
1 matrices (re)computed
tracking step 11.11
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:25: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:25: Rf phases/references reset.
275 particles transmitted, total effort of 275 particle-turns
1689476 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 275, n_total = 1000, n_lost = 725
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:01 CP: 0.62 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 11
values advanced: 5.000000e-02
1 matrices (re)computed
tracking step 12.12
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:25: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:25: Rf phases/references reset.
281 particles transmitted, total effort of 281 particle-turns
1865240 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 281, n_total = 1000, n_lost = 719
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:02 CP: 0.68 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 12
values advanced: 1.000000e-01
1 matrices (re)computed
tracking step 13.13
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:26: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:26: Rf phases/references reset.
281 particles transmitted, total effort of 281 particle-turns
2043620 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 281, n_total = 1000, n_lost = 719
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:02 CP: 0.75 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 13
values advanced: 1.500000e-01
1 matrices (re)computed
tracking step 14.14
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:26: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:26: Rf phases/references reset.
280 particles transmitted, total effort of 280 particle-turns
2224624 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 280, n_total = 1000, n_lost = 720
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:02 CP: 0.82 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 14
values advanced: 2.000000e-01
1 matrices (re)computed
tracking step 15.15
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:26: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:26: Rf phases/references reset.
288 particles transmitted, total effort of 288 particle-turns
2409104 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 288, n_total = 1000, n_lost = 712
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:02 CP: 0.88 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 15
values advanced: 2.500000e-01
1 matrices (re)computed
tracking step 16.16
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:26: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:26: Rf phases/references reset.
292 particles transmitted, total effort of 292 particle-turns
2595304 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 292, n_total = 1000, n_lost = 708
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:02 CP: 0.94 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 16
values advanced: 3.000000e-01
1 matrices (re)computed
tracking step 17.17
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:26: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:26: Rf phases/references reset.
296 particles transmitted, total effort of 296 particle-turns
2782676 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 296, n_total = 1000, n_lost = 704
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:02 CP: 1.01 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 17
values advanced: 3.500000e-01
1 matrices (re)computed
tracking step 18.18
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:26: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:26: Rf phases/references reset.
306 particles transmitted, total effort of 306 particle-turns
2972816 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 306, n_total = 1000, n_lost = 694
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:02 CP: 1.08 BIO:0 DIO:0 PF:0 MEM:22816


counter advanced: 18
values advanced: 4.000000e-01
1 matrices (re)computed
tracking step 19.19
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:26: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:26: Rf phases/references reset.
312 particles transmitted, total effort of 312 particle-turns
3164708 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 312, n_total = 1000, n_lost = 688
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:03 CP: 1.15 BIO:0 DIO:0 PF:0 MEM:22849


counter advanced: 19
values advanced: 4.500000e-01
1 matrices (re)computed
tracking step 20.20
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:27: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:27: Rf phases/references reset.
320 particles transmitted, total effort of 320 particle-turns
3358608 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 320, n_total = 1000, n_lost = 680
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:03 CP: 1.22 BIO:0 DIO:0 PF:0 MEM:22849


counter advanced: 20
values advanced: 5.000000e-01
1 matrices (re)computed
tracking step 21.21
0 matrices (re)computed after correction
tracking 1000 particles
16 Oct 15 09:27:27: This step establishes energy profile vs s (fiducial beam).
16 Oct 15 09:27:27: Rf phases/references reset.
326 particles transmitted, total effort of 326 particle-turns
3552768 multipole kicks done

Dumping acceptance output...done.
Dumping lost-particle data...
n_left = 326, n_total = 1000, n_lost = 674
done.
Dumping centroid data...done.
Dumping sigma data...done.
Dumping final properties data...done.
Post-tracking output completed.
Tracking step completed ET: 00:00:03 CP: 1.28 BIO:0 DIO:0 PF:0 MEM:22849


Finished tracking.
End of input data encountered.
statistics: ET: 00:00:03 CP: 1.28 BIO:0 DIO:0 PF:0 MEM:22846
=====================================================================================
Thanks for using Pelegant. Please cite the following references in your publications:
M. Borland, "elegant: A Flexible SDDS-Compliant Code for Accelerator Simulation,"
Advanced Photon Source LS-287, September 2000.
Y. Wang and M. Borland, "Pelegant: A Parallel Accelerator Simulation Code for
Electron Generation and Tracking", Proceedings of the 12th Advanced Accelerator
Concepts Workshop, AIP Conf. Proc. 877, 241 (2006).
If you use a modified version, please indicate this in all publications.
=====================================================================================



but,when I try to plot some pictures,I meet an error report.


sddsplot -column=x,y run.los -split=page -sep=page -graph=dot -samescales


warning: problem reading data from file run.los
Error:
Unable to read page--unrecognized data mode (SDDS_ReadPageSparse)
error: no datasets to plot

I think in the output file run.los,there is no data.


I run the command

mpiexec -np 2 Pelegant run.ele

in the cygwin on a windows computer,the program is running very well andthere are no error report!

soliday
Posts: 366
Joined: 28 May 2008, 09:15

Re: testing Pelegant on elegantExamples

Post by soliday » 16 Oct 2015, 10:21

What version of Linux are you using? I tried to figure it out from our download log but you've downloaded elegant for lots of different versions of Linux. I want to run the same version and run it against mpich2-1.1 to see what is going on.

tiansk
Posts: 39
Joined: 16 Mar 2012, 22:01

Re: testing Pelegant on elegantExamples

Post by tiansk » 16 Oct 2015, 20:00

I have two linux computers,the versions of Linux as follow:

Linux version 3.14-2-amd64 (debian-kernel@lists.debian.org) (gcc version 4.8.3 (Debian 4.8.3-7) ) #1 SMP Debian 3.14.15-2 (2014-08-09)
Linux version 3.10.0-123.el7.x86_64 (mockbuild@sbuilder.fnal.gov) (gcc version 4.8.2 20140120 (Red Hat 4.8.2-16) (GCC) ) #1 SMP Thu Sep 11 15:55:14 CDT 2014

the elegant version installed respectively as follow:

elegant-28.1.0-1.debian.8.1.mpich.x86_64.rpm
elegant-28.1.0-1.rhel.7.mpich.x86_64.rpm


I used pelegnat to test examples :elegantExamples/parallel

Simulation program can be run perfectly!

I wonder:are there some files cannot be used Pelegant?

michael_borland
Posts: 1772
Joined: 19 May 2008, 09:33
Location: Argonne National Laboratory
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Re: testing Pelegant on elegantExamples

Post by michael_borland » 20 Oct 2015, 16:52

I tried that example (acceptance/energyScan1) with Pelegant 28.1.0 and had no problems. The plots seem fine.

--Michael

tiansk
Posts: 39
Joined: 16 Mar 2012, 22:01

Re: testing Pelegant on elegantExamples

Post by tiansk » 20 Oct 2015, 20:39

The two attachment file are the output files using Pelegant with Debian Linux and Cygwin on Windows,with Cygwin, the output file is GOOD,the output file with Debian is not, two output file size is not consistent...
Attachments
run_linux.acc
(283.55 KiB) Downloaded 286 times
run_cygwin.acc
(296.26 KiB) Downloaded 293 times

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